Hanifaru MPA is a hotspot, distinguished by a unique water circulation system that creates a massive feeding and mating hub during the western monsoon. It attracts dense aggregations of endangered megafauna, specifically whale sharks and manta rays, making it a site of immense biological significance. The Hanifaru island within the MPA is as a vital nesting ground for green and hawksbill turtles, as well as an occasional roosting site for Black-naped Terns and Lesser and Brown Noddies.

Beyond its ecological value, the area holds exceptional tourism value for diving and snorkeling.